Doo Nam Kim

Thank you, that's a good point. Yes, indeed when I ran only up-to 19300 images, I got expected mrc file. Additionally, eval_vol with this data set resulted in expected volume...

I second. It appears that authors used these versions (https://github.com/ZauggGroup/DeePiCt/blob/main/2d_cnn/envs/keras-env.yaml).

I had that issue as well. Removing strict part in ~/.condarc (so leaving 'auto_activate_base: true' only) works.

> Maybe uncheck the "use deconv map" Yes, I already clicked 'Generate Mask' even after unchecking 'use deconv map' since IsoNet authors used VPP to generate this synapse data as...

Thank you for your comment @thorstenwagner Since version of dependent library matters, I think that sharing apptainer container (e.g., https://github.com/cbmi-group/DeepETPicker?tab=readme-ov-file#option-2using-docker) might help everyone (i.e., developer, user). Yes, I know that...

> pip install boltz -U I use `Found existing installation: boltz 0.4.1` But still I experience ``` Checking input data. Running predictions for 1 structure Processing input data. Generating MSA...

Same problem here with python3.10 ``` (uv_boltz_2025_07_02) [kimd999@deception03 boltz]$ uv pip install -e . Using Python 3.10.18 environment at: /qfs/people/kimd999/uv/uv_boltz_2025_07_02/.venv × No solution found when resolving dependencies: ╰─▶ Because only...