Banboye Kidzeru Elvis

icon company Wellcome Sanger Institute / MRC Laboratory of Molecular Biology icon location Cambridgeshire icon location I’m a Sanger Postdoctoral scientist originally from Cameroon working with CellGen Team. I completed my PhD in Immunology at the University of Cape Town, SA.

Results 1 issues of Banboye Kidzeru Elvis

it seems that this is a bug in SpatialDE

Input code: %%time counts = pd.DataFrame(adata.X.todense(), columns=adata.var_names, index=adata.obs_names) coord = pd.DataFrame(adata.obsm['spatial'], columns=['x_coord', 'y_coord'], index=adata.obs_names) results = SpatialDE.run(coord, counts) Output error: --------------------------------------------------------------------------- ValueError Traceback (most recent call last) File :3 File...