Kiavash Kianfar

icon indicating an email [email protected]

icon company Databricks icon location San Francisco, CA icon location Sr. Software Engineer at Databricks; Adjunct Faculty at Texas A&M University

Results 3 comments of Kiavash Kianfar

split_multiallelic should convert arrays to scalars

@Hoeze Thanks for raising this issue. @Hoeze @henrydavidge I think this is more a discussion of our Variant Schema. That is whether to have alternateAlleles and INFO fields merged as...

Is GQ re-computed after splitting multi-allelic?

This does not happen currently following what [vt decompose](https://genome.sph.umich.edu/wiki/Vt#Decompose) does. It should be easy to add. Thanks for raising.

PySpark and ndarray

Hi @EpiSlim Are your running the whole doctest code in the same sequence using the same data (the invisible and visible code blocks in docs/source/tertiary/regression-tests.rst)?