Etienne Kornobis

For example check a report from recent (with fastp) RNA-seq analysis. See in multiqc_config.yaml

This can be useful: https://www.biostars.org/p/85869/ https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/ These ucsc tools are available from conda with the "ucsc-" prefix

rRNA annotation in gff files can be misleading. For example, for the mouse genome, in the Ensembl GFF annotation, the 18S ribosomal gene feature is "ncRNA_gene" (not rRNA, although the...

Improve output table csv file per comparison

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Add to the output csv files `COND1_vs_COND2_degs_DESeq2.csv`: - [ ] annotation (present in rnadiff.csv but not in per comparison files) - [x] Fix the mismatch between header and columns when...