khb3850

Sorry for the late reply. Literally, I used the command from your tutorial with my own data set. Here is the R command that I used. --------------------------------------------------------------------------------------------- path2

Thank you for your fast reply! In your R session, prior to running removePrimers, can you run the sessionInfo() command and post the output? --> This is the output for...

For the first thing, when I tried to run only one sample as you suggested, exact same result (R session aborted) was detected. For the second thing, Yes, the quality...

I tried following your comment. Here is the all commands and result for that. --------------------------------------------------------------------------------------- > path path [1] "D:/Practice/MiSeq_SOP" > list.files(path) [1] "F3D0_S188_L001_R1_001.fastq" "F3D0_S188_L001_R2_001.fastq" [3] "F3D1_S189_L001_R1_001.fastq" "F3D1_S189_L001_R2_001.fastq" [5] "F3D141_S207_L001_R1_001.fastq"...

Okay. No problem. Then, please let me know your email address.

I sent the CCS files via email. Thank you!

Thank you for your kind reply. I tried the same code with you, but it doesn't work for me. After reinstalling R and DADA2, I'll retry it. One more question,...

Hello I reinstalled the R version 4.2.1 and DADA2 ver. 1.24.0 in both Windows Subsystem for Linux 2 (WSL2) Ubuntu and Windows. And I tested whether the command "removePrimers" is...

I am adding the test result. I tried the removePrimer command using the fastq file having only 10% of the original data (174 reads), in that case, the command was...