Refining tumor/normal assignment

[nandobonf]

Dear authors, I successfully ran Numbat on multiple samples, however in some cases I would need to refine the tumor/normal definition (or eventually remove "noisy" CNV calls such as the BAMP). In the case shown below, for example, it is clear that genotypes 1 and 2 demote normal cells, instead, Numbat only calls genotype 1 as "normal". You can see the Numbat tumor/normal annotation labeled as "type" in the heatmap below. Any suggestions would be highly appreciated. Thanks in advance.