Feeding output from getPerCellTypeDE into Heatmap

[Dimmiso]

HI, Thanks a lot for supporting CONOS! I am back to using this great tool and try now function getPerCellTypeDE. It looks very promising but I cannot find the way how to plot output genes on a heatmap. plotDEheatmap instantly takes as input DE output list from getDifferentialGenes function, but not from getPerCellTypeDE. It is expected as structure of output lists from procedures differs. I tried for plotDEheatmap set de <- NULL and manually feed in top gene list from getPerCellTypeDE via additional.genes parameter. But keeping de <- NULL triggers getDifferentialGenes from inside plotDEheatmap and plotting those genes. Thus, if I am not mistaken there is no simple way to visualize results of getPerCellTypeDE function on heatmap. If I am right, can you please address this issue? It would be ideal to be able feeding output list from getPerCellTypeDE into plotDEheatmap. Thanks a lot! Dmitry