Kyle Fletcher

icon indicating an email [email protected]

icon company University of California icon location Twin Falls, USA icon location Scientist at UC Davis, Genome Center. Oomycete biology.

Results 2 comments of Kyle Fletcher

Building and using local databases

Did you find a solution? How about this section of the README? https://github.com/sokrypton/ColabFold/blob/main/README.md#generating-msas-for-large-scale-structurecomplex-predictions It looks like `colabfold_search` should produce the msa that can then be provided to `colabfold_batch`

CIGAR and query sequence lengths differ for reads in smoothed.selective.bam

Thanks for the response, I cloned and compiled from the lowcov branch `git clone -b lowcov https://github.com/Parsoa/SVDSS.git` and can confirm the expected output from `SVDSS smooth` ``` [I] Loading first...