kevinlibuit

Bioinformatics Pipeline Standards and Review Process

3

Creation of standards by which bioinformatics resources can be systematically assessed plus a review process defining the assessment criteria and procedure

Need for PHA4GE guidance doc on AMR gene detection

Last updated [2021-12-07](https://github.com/pha4ge/pipeline-resources/blob/main/docs/bioinfo-solutions.md) - Should include changelog

[Request An Update]: artic-ncov2019-epi2me to version 0.3.31 and include r10 models

4

### What container needs an update? I know all of these containers are awesome, but I'm not currently seeing a medaka container with r10 models available.

ksnp3 - Missing app & test layer

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### What container needs an update? I know all of these containers are awesome, but... App and test layer need to be added to [ksnp3 Dockerfile](https://github.com/StaPH-B/docker-builds/blob/master/ksnp3/3.1/Dockerfile) to be compatible with...

### What container needs an update? I know all of these containers are awesome, but... App and test layer need to be added to [colorid Dockerfile](https://github.com/StaPH-B/docker-builds/blob/master/colorid/0.1.4.3/Dockerfile) to be compatible with...

### What container needs an update? I know all of these containers are awesome, but... App and test layer need to be added to [clustalo Dockerfile](https://github.com/StaPH-B/docker-builds/blob/master/clustalo/1.2.4/Dockerfile) to be compatible with...