EnhancedVolcano

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When I was trying to save volcano plot in pdf format, error popped up: "Error in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : Metric information not available for this family/device". I checked...

YOUZhen93

lab does not properly output labels when column name is input

2

Hi, The documentation says the input for lab is a column name in the data table. But when I did this: EnhancedVolcano(res, lab = "X_1", x = 'log2FoldChange', y =...

rjferrer

Hi. Thanks for developing this package. I just wonder is there a way to not plot the y axis as -log (fc) but as linear scale? Thanks.

matwgmkw

Change point border color?

1

I'm trying to see if there is a way to give the points in my volcano plot black borders so I can see them better. The only setting I see...

mholtz2

Hello, First of all, thank you for creating such a beautiful visualisation tool! Say I have some genes I want to highlight, would it be possible to "bring forward" these...

nhjk-23

Errors when using EnhancedVolcano with plotly::ggplotly

1

I've verified that my plot is infact a ggplot object: ``` > class(p) [1] "gg" "ggplot" ``` Most ggplot objects can be made interactive by doing: ``` plotly::ggplotly(p) ``` However,...

dy-lin

My Volcano plot is working fine for the argument on shape for all as below; EnhancedVolcano(res_df, lab = res_df$gene_sym, x = 'log2FoldChange', y = 'pvalue', title = 'MSC Cellular RNA...

imranjesar

output graph doesn't display any of the selected genes

2

Hello I am trying to highlight some genes in the volcano plot. However, the output graph doesn't display any of the selected genes. This is the code: p

ofleitas

Dear Kevin (@kevinblighe) Thank you for developing Enhanced volcano plot package. I would like to ask for a favor on this. I want to thin the x-axis and y-axis lines....

rezarahman12

Deprecated warning

2

Hello, I just wanted to inform you about a warning which pops up when you use the `shape` argument. ``` Warning: The `guide` argument in `scale_*()` cannot be `FALSE`. This...

Shashankti