EnhancedVolcano
EnhancedVolcano copied to clipboard
Deprecated warning
Hello,
I just wanted to inform you about a warning which pops up when you use the shape
argument.
<warning/lifecycle_warning_deprecated>
Warning:
The `guide` argument in `scale_*()` cannot be `FALSE`. This was deprecated in ggplot2 3.3.4.
ℹ Please use "none" instead.
ℹ The deprecated feature was likely used in the EnhancedVolcano package.
Please report the issue to the authors.
---
Backtrace:
1. base (local) `<fn>`(x)
2. ggplot2:::print.ggplot(x)
4. ggplot2:::ggplot_gtable.ggplot_built(data)
5. ggplot2:::build_guides(...)
6. ggplot2:::guides_train(...)
7. ggplot2:::deprecate_warn0(...)
Thank you @Shashankti, for reporting. I will make the update.
EnhancedVolcano(res,
-
lab = rownames(res),
-
x = 'log2FoldChange',
-
y = 'pvalue',
-
selectLab = c('TMEM176B','ADH1A'),
-
xlab = bquote(~Log[2]~ 'fold change'),
-
pCutoff = 10e-14,
-
FCcutoff = 2.0,
-
pointSize = 4.0,
-
labSize = 6.0,
-
shape = c(4, 35, 17, 18),
-
colAlpha = 1,
-
legendPosition = 'right',
-
legendLabSize = 14,
-
legendIconSize = 5.0)
Warning message:
The guide
argument in scale_*()
cannot be FALSE
. This was deprecated in
ggplot2 3.3.4.
ℹ Please use "none" instead.
ℹ The deprecated feature was likely used in the EnhancedVolcano package.
Please report the issue to the authors.
This warning is displayed once every 8 hours.
Call lifecycle::last_lifecycle_warnings()
to see where this warning was
generated.