EnhancedVolcano

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while adjusting shape of plotted points ，accepts four possible values: Error in `[[<-.data.frame`(`*tmp*`, i, value = c(NS = 1, FC = 2, P = 3, : replacement has 4 rows, data has 3

1

When I followed the tutorial on the [bioconductor package vignetttes of EnhancedVolcano](https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/inst/doc/EnhancedVolcano.html) it appeared ```{r} EnhancedVolcano(res, lab = rownames(res), x = 'log2FoldChange', y = 'pvalue', shape = c(1,2,3,4) ) #>>>...

wanganlin00

Labels for infinite values do not show up anymore

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Hi Kevin, Thank you for this wonderful package, I am using it now for quite a while! Recently, there must have been an update for ggrepel or similar. I used...

tobimaile

Added box.padding argument to allow connector length to be increased easily; matchLabelColorsToSig argument to color text labels by significance

1

This pull adds the `box.padding` argument from `ggrepel::geom_text_repel()` (link to the documentation [here](https://ggrepel.slowkow.com/articles/examples.html#options)) to the `EnhancedVolcano` function to allow convenient manipulation of the connector length by changing the padding of...

benjibromberg

Highlight Key gene with different color and shape, break x-axis

2

Hi Kevin, Thank you for developing such an amazing package. I have been using this for a long time. I was able to generate the volcano plot but I would...

rana228

Dear Kevin, Thanks a lot for providing us with the EnhancedVolcano package. I have seen several posts in Biostars and Stackoverflow regarding the issue with increasing the length of the...

geneyology

Hello I am trying to label certain points in volcano plot while also keeping everything else that it labels by default. I used `selectLab` but it removes every other label...

groy87

Hello, Please help me with fixing this issue. I just want to two color coded volcano plot. Blue for Fold_Change < -1.5 & p_value # Continue with the EnhancedVolcano function...

vetmohit89

Quantities of DEGs (Red Dots) in Plot Do Not Match Known DEG Quantites in Dataset

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Hello! First off, thank you for such a great program to plot our transcriptomic data. I am experiencing an issue where I have a known number of DEGs (10 up...

cdixo

Hi, I have RNAseq data from a knockout vs. wt mice study. The problem is, when I try to render a volcano plot with the genes, the plot is skewed...

junli1988

Volcano plot labels do not show up in new window

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Hi, I have produced a volcano plot as per the instructions in the document in RMarkdown. However, when I try to expand the plot to visualize in the new window,...

zoqaiyum