keenhl

I redid with a different configuration of of TensorFlow and Python thinking that might help. I still get the same error. TensorFlow v2.11.0 (~/opt/miniconda3/envs/tf3/lib/python3.7/site-packages/tensorflow) Python v3.7 (~/opt/miniconda3/envs/tf3/bin/python) Error in py_get_attr_impl(x,...

If I do this as suggested at the link. tf$reset_default_graph

I redid with a third different configuration of of TensorFlow and Python thinking that might help. I still get the same error. TensorFlow v2.1.0 () Python v3.6 (~/Library/r-miniconda/envs/r-reticulate/bin/python) Error in...

Thanks for providing the code. I modified it as below and the sequencing summary file seems to be correct now, but I'm still getting an error. [14:54:32] Getting read filenames....

As stated above, Python 2.7 is required for installation of Chromosomer. You could use conda to set up a Python 2.7 environment and wouldn't have to mess up your existing...

Thanks for the response. I got some fastq files generated from a Nanopore direct sequencing of RNA and there were Us instead of Ts. Not sure if that is the...

I think the map_ont should work for this. -x STR preset (always applied before other options) [] - map-ont (ont-to-ref, uses default param) - map-pb (hifi-to-ref, all defaults but does...

What error are you getting?

@rania-o What other tools have you tried ?

@yemingx @orangehe @pynie1 I'm having the same problem with resquiggle (i.e., stuck at 0 %). The HDF plugin is installed. Any other suggestions to get this to work. Thanks.