Dr. K. D. Murray

Results 37 comments of Dr. K. D. Murray

> I am facing the same error > > `[ 3%] Building C object src/libqes/src/CMakeFiles/qes_static.dir/qes_compat.c.o clang: error: no such file or directory: 'NOTFOUND' make[2]: *** [src/libqes/src/CMakeFiles/qes_static.dir/qes_compat.c.o] Error 1 make[1]: ***...

If your log is the same as @Abieskawa, then it's an issue with openmp on OSX. You need to install (with homebrew or similar) a more recent and complete version...

That's a shame @lcamVz, but I'm glad you got it working somewhere. OSX is hard, as I don't have access to a Mac on which to test. Out of interest,...

the issue is that it seems the builder pins python=3.10, but snakemake requires 3.11. I would have thought that pulling in snakemake would upgrade python to 3.11, but seems not?!?

One can also just issue `options(pavian.maxFiles=1000)` before `pavian::runApp(...)`, there is no need to modify the source or clone locally

This is the job of [`--cluster-generic-status-command`](https://snakemake.github.io/snakemake-plugin-catalog/plugins/executor/cluster-generic.html) and its equivalents. You should write a script that queries the cluster for a job's status, and snakemake will call that script to get...