fastman
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kaustubhad
An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
Hi, I am overlaying k-mers over snp-based association in Manhattan plot where if I don't change the size of highlighted k-mers associations , I can't differentiate them as the highlighted...
fastqq appears to expect parameter to be named p1 instead of p. Function worked once I looked at the code itself, but couldn't find that in the vignette downloaded with...
Hi, Thanks for the package!. Is there a way to define the length of each Chr so that two manhattan plots can be compared to each other with the same...
Hi, I have a plot where the signals I got go to 10-3 only... So the plot automatically sets the ylim to 4... I am trying to set it to...
Current biobank and meta-GWAS are well-powered enough that almost all will contain a P-value smaller than 1e-14, so there isn't a single value that is sensible default for truncating the...
Hi, I want to color all points above the threshold as one color. I thought I could set a hex code for col, i.e. col="#DC7633", but that doesn't work. Any...
Hi, one possible upgrade that would help a lot is calculating the annotationWinMb across chromosomes. For example, a SNP label at the end of one chromosome and the beginning of...
I am running the following code: install.packages("remotes", repos = "http://cran.us.r-project.org", lib="/z/Comp/lu_group/Members/jwlorge/ATN/R") remotes::install_github("danioreo/fastman",lib = "/z/Comp/lu_group/Members/jwlorge/ATN/R") Which gives me the following error: Error: package or namespace load failed for ‘fastman’ in namespaceExport(ns,...
Sorry for my very basic question. Is it possible to run fastman in a sliding window way? Thanks
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An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.