Kaushik Roy

I have noticed that the filenames for the Matlab scripts for reproducing the figures in the 'reproducibility' folder are inconsistent with the Figure names that appear in the final version...

Identification of genes and cells from .mtx file

1

I would like to understand how Sanity reads the .mtx file generated by CellRanger and prints the number of rows, genes and cells. For example, I have a matrix.mtx file...

I have a question regarding the recommendations provided in : https://github.com/scverse/scanpy_usage/blob/master/180209_cell_cycle/cell_cycle.ipynb to compute cell cycle scores using Scanpy. Specifically it mentions that the adata should be scaled to have zero...