Kateřina Jurásková

Hello, Thank you for the great job you are doing! I have the same issue. In my case, I need to load two different BAM files with indexes. I understand...

Thank you for your reply. There are many problematic regions, not just one. I tried to set threads to 120 but it behaves exactly the same as before. It’s 6...

Of course. The files are too big so I'm sending you the link using Filesender. There are subset.bam with one of the problematic regions 1:103334975-155002413, the whole bam file (just...

No problem. I'm sending you the new link: https://filesender.cesnet.cz/?s=download&token=a91a531a-6c7a-4165-89d6-8305301c6528 The SomaticSeq itself was slow. Callers took some time but it wasn't something crazy considering the size of the dataset.

Hello @litaifang, I just wanted to follow up on our conversation regarding the slow performance of SomaticSeq on RNA data. I understand you may have been busy, but I wanted...