Kathleen Abadie

Cluster loss during rule reformat_filter_clusters

1

Hello, During the rule_reformat_filter_clusters step, only 36% of the clusters are being written, and I am not sure why. I understand this is happening in parse_clusters.py but have not been...

Question about use of the population.size parameter in computeCommunProb for spatial datasets

1

Hello, Thank you for making and maintaining CellChat! I have been using it to analyze cell-cell interactions in a 10x Xenium spatial dataset. I am running computeCommunProb using the parameters...