Ekaterina Kazantseva

Hello, thank you for using Strainy! You can map read names and unitig names using _intermediate/clusters/.csv_ files. For example for the provided toy data you can open _intermediate/clusters/clusters_edge_188_1000_0.2_ and find...

As for the second question, the tag ex:i is used to mark the number of supporting reads between clusters of different unitigs (except for special values like 555, 666, 888)....

Hello, If only single cluster corresponds to a unitig it means that it has not been phased, this can happen for various reasons such as low unitig coverage or low...

Hello! Here, apparently, there is an error at the stage of validation of the gfa file. You can try to disable the validation by setting level to 0: `strainy-1.2/share/strainy/strainy/main.py, line...

Hi @lalalagartija ! Could you please resend the gfa file, the link you provided has already expired. Thank you!