Kasper Daniel Hansen

icon indicating a website link http://www.hansenlab.org icon indicating an email [email protected]

icon location Baltimore, United States icon location Associate professor in Biostatistiscs @JHU. Research in statistical genomics.

Results 5 issues of Kasper Daniel Hansen

WISH: rowSort

2 comment

Return value when `index.return = TRUE` would be a list of 2 matrices.

feature request

annotation version / genome

1 comment

Currently, `seqinfo` is empty. It should be populated based on the genome we use. Is there a way to store the annotation (ie. gencode) inside the object? Not sure how,...

enhancement

list conversion tools

1 comment

From reading the web pages it was not immediately clear to me if any tools exists to convert to/from DAR. I am especially interested in conversion to/from markdown (some flavour),...

gaps and GRangesList

3 comment

`gaps()` does not work on a GRangesList: ``` > gaps(grIntrons.24) Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘gaps’ for signature ‘"CompressedGRangesList"’ ```...

findOverlaps with type="equal" and a GRangesList

6 comment

When I use findOverlaps with type="equal" and a GRangesList I get an error: ``` > findOverlaps(gr, grIntrons.24, type = "equal") Error in match.arg(type) : 'arg' should be one of “any”,...