Karl Nordström

Results 7 comments of Karl Nordström

I would also appreciate the possibility of manipulating the x-axis scale. It is probably already known, but this work-around works: ``` fig

I had trouble running the current version of the pipeline with a reference genome with chromosomes sorted as [chr1, chr2, chr3, ..., chr10, ... ] instead of [chr1, chr10, chr2,......

Hi Emilo, of course... The pipeline stops during the bigwig step. This is the command log: [command.log](https://github.com/guigolab/grape-nf/files/1859776/command.log) The script runs if I sort the bedGraph files as suggested by these...

Looks like there is an embarrassing mistake behind this... it occurred when testing to set the pipeline up with on BioConda and I didn't run the pipeline as per ususal......

The problem remained when I corrected the mistake reported above, but I think I figured it out. It comes down to the bedGraphToBigWig version. I was testing my bioConda environment,...

Yes, that looks very interesting. > For now we could test by using this workaround. I think that is what I'm doing momentarily: ` ~/miniconda2/bin/conda create env -f grape-nf_environment.yaml.gz source...