karenlawwc

@sjfleming I am currently facing the same issue. I was able to load the h5 output with this input function you stated here https://lightrun.com/answers/broadinstitute-cellbender-read_10x_h5-error-in-scanpy-191 But after further analysis and I...

Sorry for being not clear. I have three levels of covariate variable but none of them is control. I am wondering is it best to compare between Treatment 1 vs...