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Python keywords cause errors when used as tag names
$ samsift -i filtered.sam -f 'is>50'
...
Traceback (most recent call last):
File "/home/kb219/miniconda/bin/samsift", line 11, in <module>
sys.exit(main())
File "/home/kb219/miniconda/lib/python3.6/site-packages/samsift/samsift.py", line 418, in main
sam_sift.run()
File "/home/kb219/miniconda/lib/python3.6/site-packages/samsift/samsift.py", line 283, in run
self.process_alignment(alignment)
File "/home/kb219/miniconda/lib/python3.6/site-packages/samsift/samsift.py", line 248, in process_alignment
self._filter()
File "/home/kb219/miniconda/lib/python3.6/site-packages/samsift/samsift.py", line 182, in _filter
self.passes=eval(self.filter, self.vardict)
File "<string>", line 1
is>50
^
SyntaxError: invalid syntax
Solution:
samsift -i filtered.sam -f 'locals()["is"]>50'