Karatuğ Ozan Bircan

Released https://github.com/EBISPOT/gwas-sumstats-harmoniser/releases/tag/v1.1.5 and https://github.com/EBISPOT/gwas-sumstats-harmoniser/releases/tag/v1.0.6 and submitted the test files to codon-slurm again.

For gwas-sumstats-harmoniser migration: Test submitted to codon-slurm and it's successful. There's one small mistake in meta.yaml files. @jiyue1214 is helping me to investigate the problem.

Thanks to @jiyue1214 fix, released [v1.1.7](https://github.com/EBISPOT/gwas-sumstats-harmoniser/releases/tag/v1.1.7) and [v1.0.7](https://github.com/EBISPOT/gwas-sumstats-harmoniser/releases/tag/v1.0.7) now and testing again in codon-slurm. ```bash [gwas_lsf@codon-dm-06 cron]$ ./start_harmonisation_slurm_test_goci1179.sh Submitted batch job 65232999 ```

For gwas-sumstats-harmoniser migration: I compared the output of the harmonisation pipeline in SLURM and LSF. - `.h.tsv.gz`, `.h.tsv.gz.tbi`, `md5sum.txt` files are identical. - In running.log, we have a higher percentage...

Item 1 should be fixed now.

created another issue for the 2nd issue as it's a different case. https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/gh/ebispot/goci/1304

created another issue for the 3rd issue as it's a different case. https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/gh/ebispot/goci/1306

List of all GCSTs created since Apr 5 is at `/hps/nobackup/parkinso/spot/gwas/scratch/goci1292/gcst_ids.txt`

Published them to RabbitMQ.

I've updated the crontab entries for `depo-sync`. There are now two entries: one begins at 13:00 and the other at 20:00. Each runs for 3 hours and 55 minutes to...