Karatuğ Ozan Bircan
Karatuğ Ozan Bircan
The job in SLURM failed, submitted using LSF. ``` 92613079 gwas_ls RUN standard codon-login hl-codon-44 *sf.config Mar 18 12:49 ```
LSF job is likely to fail, do first https://github.com/EBISPOT/goci/issues/1257
https://github.com/EBISPOT/goci/issues/1257 done. Submitted a SLURM job now. JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON) 383374 standard goci1258 spotbot R 0:13 1 hl-codon-10-01
still running...
I have contacted Yue for assistance in debugging the issue, as similar failures are occurring frequently. ``` [1a/b4a5a3] process > NFCORE_GWASCATALOGHARM:GWAS... [100%] 39 of 39, failed: 39 ```
- [x] Copy harmonised files from `/nfs/ftp/private/gwas_cat/harm_test/success/GCST90268001-GCST90269000/` to the public ftp.
@eks-ebi Please confirm that the files are indeed on the public FTP.
Moved the following pages to "Archived Documentation" Data release process - old https://www.ebi.ac.uk/seqdb/confluence/display/GOCI/Data+release+process+-+old Release to London data centres https://www.ebi.ac.uk/seqdb/confluence/display/GOCI/Release+to+London+data+centres
The following also not updated for a while and seem old, moving them to `Archived Documentation` as well. Data release QC https://www.ebi.ac.uk/seqdb/confluence/display/GOCI/Data+release+QC Data Release (production) https://www.ebi.ac.uk/seqdb/confluence/pages/viewpage.action?pageId=54646811 Data Release (Test) https://www.ebi.ac.uk/seqdb/confluence/pages/viewpage.action?pageId=54642237...
Added here https://www.ebi.ac.uk/seqdb/confluence/display/GOCI/SLURM+changes+in+Data+Release+Build+Process