Karatuğ Ozan Bircan

16648861 - merge-regenie complete.

For regenie studies: ``` No files found for blood_biochemistry_oest_0 with ancestry ASJ. Skipping... No files found for blood_biochemistry_oest_0 with ancestry EAS. Skipping... No files found for blood_biochemistry_rhaf_0 with ancestry AFR....

Submitted a `gwas-ssf format` SLURM job for formatting regenie files. Expect them in here in 2 days: `/hps/nobackup/parkinso/spot/gwas/scratch/goci-1267/aws/formatted/gwas_summary_stats_quant/`

16648847: merge_gwas_summary_stats Ended

Attached is the skipped list for `gwas_summary_stats` [gwas_sumstats_skipped_list.txt](https://api.zenhub.com/attachedFiles/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBKzh6QlE9PSIsImV4cCI6bnVsbCwicHVyIjoiYmxvYl9pZCJ9fQ==--1b6c087fe1e6663ddbb31c36b91febfd5296407f/gwas_sumstats_skipped_list.txt)

Unfortunately `Disk quota exceeded` for `spot/gwas/scratch/` and some of the merge operations failed. I'll talk to the Codon team for how to best navigate this issue.

Talked to Codon team. - [ ] I'll move copied files and backup files to `lts` (and talk to Storage team if we don't already have space) - [x] Restart...

Tested the validation with the file `blood_biochemistry_ua_0_EAS_combined_formatted.regenie.gz`, it worked okay

merge job for `gwas_summary_stats` resumed. ``` Submitted batch job 22796315 ```

Done - a SLURM job for gathering data (e.g. md5sums of the files, calculating variant counts etc.) for the metadata template.