karafecho

We also plan to incorporate LOINC2HPO into our FHIR PIT pipeline. See [Zhang et al. 2019 manuscript](https://www.nature.com/articles/s41746-019-0110-4) for additional information.

@sierra-moxon : The general use case is shared across clinical KPs. LOINCs are simply codes for laboratory measurements. They require a value and reference range or flag (e.g., high, normal,...

The challenge is that outcomes such as 'ED visits' or 'hospital readmission' or 'surgical intervention' do not really map to DiseaseOrPhenotypicFeature. 'Sibling' might work, but I'm wondering if outcomes are...

During Friday's meeting of the Clinical Data WG, I put forward another common outcome metric: death. Anne T. clarified that this is currently treated as a 'PhenotypicFeature' in Biolink. The...

This is being actively worked on by Matt, Richard, myself, and others on behalf of the clinical data committee. Requirements gathering is complete; implementation has yet to be initiated.

A couple of additional notes: COHD and ICEES KG are currently using the "supporting data source" slot to point to the corresponding wiki pages. Those pages capture the underlying source...

Thanks for your input, @mbrush. I think we should discuss your proposal after the September release. While I understand the intent and appreciate the elegance of the proposed solution, I...

So, apparently, icees-kg diverged from COHD when we moved to Automat. Here's an example of what icees-kg is providing on edges: "sources": [ { "resource_id": "infores:icees-kg", "resource_role": "primary_knowledge_source", "upstream_resource_ids": null,...

Here's a list of the infores supporting data sources for icees-kg: ``` - id: infores:unc-cdwh-ehr-data status: released name: UNC Carolina Data Warehouse for Health Patient EHR Data xref: - https://tracs.unc.edu/index.php/services/informatics-and-data-science/cdw-h...

Thanks, @mbrush. I'll work with the Automat folks to get icees-kg back in compliance with the latest TRAPI spec. WRT my concerns regarding supporting data sources, I actually have several....