Curtis Kapsak
Curtis Kapsak
### What container needs an update? App and test layer need to be added to [wtdbg2 dockerfile](https://github.com/StaPH-B/docker-builds/blob/master/wtdbg2/2.5/Dockerfile) also missing tool-specific README.md
### What container needs an update? [tiptoft dockerfile missing app and test layer](https://github.com/StaPH-B/docker-builds/blob/master/tiptoft/1.0.2/Dockerfile) also missing tool-specific README.md
### What tool are you looking for and why? https://github.com/HKU-BAL/Clair3 variant caller for nanopore data. They provide a dockerfile and pre-built images on dockerhub but may be useful to add...
Setting as a draft for now, since I'd like to add links to the training materials on the main `/README.md` but wanted to at least get the ball rolling on...
I will try to get the nuccore accessions, taxid where available low priority request, but would be good for identifying Diphtheria
To quote @andersgs "Please accept my PR..." 😃 I created a new docker image for v0.8.2 of snp-dists and it's hosted on dockerhub and quay. I'm happy to be responsible...
I've hit an odd issue where `fastq-dl` pulls FASTQs without issue, but they are in SRA Lite format instead of the typical SRA Normalized format. FASTQs in SRA Lite format...
Just want to report that the `--input-pcr-primers` option for `nextclade run` is listed in the help options. According to migration docs here: https://docs.nextstrain.org/projects/nextclade/en/stable/user/migration-v3.html#some-cli-arguments-for-individual-input-files-are-removed this option has been removed. Is it...
**Is your feature request related to a problem? Please describe.** Yes, many public health laboratories have limited experience working with Candida auris in the lab (identifying a species via wet...
### What tool are you looking for and why? We just deployed a dorado docker image in PR #1051 , but this docker image contains all available dorado models so...