Kâmuran İmran

Testing asteroid plot, scaling by RSA and colour by hydrophobicity ```python fig1 = asteroid_plot( g=g, node_id=node, colour_nodes_by="hydrophobicity", size_nodes_by='rsa', node_size_multiplier=80 ) ``` 

@a-r-j any changes you want me to make?

Sure, I've already built something like this for my own use case so would be happy to figure out an elegant way to make it generalisable and add it to...

Hey @a-r-j , yep I figured the same thing but was waiting to hear back from you -- I actually modified `visualisation.py` to use `g.graph["distmat"]` as I wasn't sure what...

@a-r-j another issue is when the subgraph is plotted, the node labels are assigned to the x and y axes randomly (but the actual distance matrix cols / rows are...

@a-r-j yep you're right, shall I give it a go and submit a pull request? On another note, do you think it would be appropriate to allow other options for...

Thanks for the heads up @mdehoon , I will update the PR accordingly. I'm guessing I don't see the deprecation warning for `pairwise2` because this repo's environment has an older...

Alternative documentation link (to identical webpage content): https://emboss.sourceforge.net/apps/cvs/emboss/apps/compseq.html

> LGTM, after the suggestions are applied @sebastiaanspeck added your suggestions but modified them to still retain information such as the sequence type (amino acid / nucleotide) in the input...

I've looked at the `alignment.indices` property and am confused as to how that could be used to solve my initial problem. I want to map a specific position in one...