Kalani Ratnasiri

Error: The index version file /labs/Resources/MMUL_10/index.salmon/versionInfo.json doesn’t seem to exist. Please try re-building the salmon index.]

5

Issue with salmon for bulk RNA-seq The following code was run to invoke salmon: ``` docker run --rm -v /labs/Resources/mmulatta/MMUL_10:/mnt/indexdir/ resources/salmon salmon index -t /mnt/indexdir/gentrome.fa -d /mnt/indexdir/decoys.txt -p 8 -i...

wrangling-genomics/04-variant_calling: Viewing with IGV - typo

2

Checkout submission: In the following sentence from the episode: "We’ll put this folder on our Desktop for demonstration purposes, but in general you should avoide proliferating folders and files on...

'SparseCSCView' object has no attribute 'A'

8

When I run mv.aggregate_peaks_10x with both the demo and my own data, I get this error: 'SparseCSCView' object has no attribute 'A' How can I get around this?