Kai Wang comments

Repositories
Issues
Comments

Results 4 comments of


                                            Kai Wang

Feature Request: structured data in VCF:INFO (XML, JSON ?)

Petr asked me to post a comment here (I am developer of ANNOVAR). I think VCF should ideally remain as a text, readable format, that can accommodate simple operations by...

methylation calling in non-CpG context (CHG and CHH)

This is in principle very possible, as long as there is a good training data with paired gold standard on methylation within CHG and CHH motif. If you are aware...

methylation calling in non-CpG context (CHG and CHH)

DeepMod2 can train on R10 flowcell but the model will be different from those on R9.4. We have tested it on HG002 (on R10) and it works well.

NextSV No Output

As I mentioned in email, samtools 1.3 does not support -T argument On Tuesday, October 18, 2022, Li Fang ***@***.***> wrote: > Hello @543090lee , > Sorry for the inconvenience....