Kai Lawson-McDowall

icon company Sonrai Analytics icon location Cambridge icon location Hello everyone! I'm Kai, I've just started as a Bioinformatician/Software engineer at the Belfast based company - Sonrai Analytics

Results 3 issues of Kai Lawson-McDowall

PLOT_EXPLORATORY module breaks with large number of samples.

1 comment

### Description of the bug When running a large number of samples (~700 in the samplesheet) through the differentialabundance pipeline, the `PLOT_EXPLORATORY` module will generate an OOM error, even when...

bug

Support for different parameters (I.e. different PTMs and Enzymes)

### Description of feature A request for QuantMS to support analysis of samples that contain different sets of post-translational modifications (e.g. samples enriched for phosphorylated proteins vs samples that are...

enhancement

Error in the msstats_tmt.R function parse_contrasts

1 comment

### Description of the bug There are appears to be a bug in the msstats_tmt.R function, which is executed by the process MSSTATS_TMT module. Specifically, in the parse_contrasts function. The...

bug