Chengxin Zhang

Users have been asking this question very frequently. Maybe we should put the link to legacy psi-blast in the README.md or addss.pl file.

I have prepared a C++ program at https://github.com/pylelab/USalign/blob/master/pdbAtomName.cpp which can very quickly fix atom name for old ESM atlas pdb files. With this program, it should be pretty easy to...

For Question 2, suppose the target database is called targetDB, the number of database proteins can be obtained by ```bash cat targetDB.lookup |wc -l ```

I do have libc++ (which is called libstdc++ in ubuntu)

If there is no libc++, then gcc cannot compile maloader. The fact is, i can compile with gcc/g++, but not clang.

I have installed libc++ and it compiles well, thanks.

Thank you very much for the patch. hhsuite2 is now happily working with uniclust30. The main reason I am still sticking with hhsuite2 is that for some proteins, hhblits3 generates...

Great, thank you very much.

I have tried uniboost30 for contact prediction, and am shocked to find that on ~200 proteins, uniboost30 + ccmpred is consistently worse than uniclust30 + ccmpred. For example, for PDB...

I have also checked that the reason uniboost30 is worse than uniclust30 is not because uniclust30 is more recent, as all version of uniclust30 since 2016 gives better ccmpred precision...