jwokaty

This is for the package APL. If you don't want to include it in the docker image because of the size, I understand and this issue can be closed, but...

So in docker, we should be installing apt dependencies from the following files: * apt_bioc.txt * apt_cran.txt * apt_optional_compile_R * apt_required_compile_R * apt_extra_fonts * apt_required_compile_R * apt_required_build_R We're not installing...

@nturaga Thanks for trying to answer some of my questions as well as pointing me to the rocker scripts. I'm not sure if there's a better way to investigate these...

I marked all the packages that are in both docker and the BBS: ``` apt_bioc.txt:graphviz # for Rgraphviz # Bioconductor Docker apt_bioc.txt:libgtkmm-2.4-dev # for HilbertVisGUI # Bioconductor Docker apt_bioc.txt:libgsl-dev #...

``` # Current devel as of July 23? [1] "affyPara" "canceR" "CelliD" "cellity" [5] "CompGO" "ctgGEM" "CytoTree" "fgga" [9] "GateFinder" "gCrisprTools" "gpuMagic" "immunotation" [13] "lisaClust" "methyAnalysis" "phemd" "rawrr" [17] "SCATE"...

I've tried to address all previous comments. However, I'm not attempting to recreate what is in the master branch nor the BBS, but a container that installs packages from the...

Let's follow the previous format using initials for the `DESCRIPTION`. Looking at https://github.com/Bioconductor/Biostrings/blob/c94e8fb082601cf3e3998df82cf1a9b39c72cb27/vignettes/MultipleAlignments.Rnw#L278-L283, I suspect that the original authors moved the figure to waste less space on the pages of...

I can check that the issues are resolved then notify @hpages.

@hpages This is ready for your review.

@villafup Please remove .Rnw file. I don't think you need to modify the DESCRIPTION because there are other PRs that add BiocStyle