Jonas Windhager comments

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                                            Jonas Windhager

Document & test use with singularity

Hoi @Elena983, I haven't tested using steinbock with Singularity myself, and steinbock is now in the hands of @Milad4849, but from your screenshot it appears that you'd need to adapt...

Document & test use with singularity

Please compare your alias with https://github.com/BodenmillerGroup/steinbock/issues/159#issuecomment-1416490900, e.g. regarding the use of `--env RUN_FIXUID=` and `docker://`

two sets of images with slightly different panels

@Milad4849 hope its ok that I chime in here, got a similar question recently. --- Hi @Will760, Although considered a hack/not officially supported, I would propose the following: **Preprocess the...

two sets of images with slightly different panels

Hi @Will760, I take it you've resolved this issue?

Update the CellProfiler pipeline for pixel classification based segmentation

Out of curiosity: in what way?

Compression error/ how to define the "compression_type" argument?

Hi @Milad4849 Without looking into this in too much detail, I would suspect that the `TiffWriter.write` API may have changed since the last release of xtiff: instead of a single...