justbennet
justbennet
@effigies That was the problem -- there was no error message directly related to the OMP threads option. Here is what it says. ``` $ fmriprep --anat-only --fs-license-file /home/bennet/freesurfer_license.txt --nprocs...
That isn't the order that is shown by `fmriprep --help`, though, which lists the options in the order, ``` $ fmriprep --help usage: fmriprep [-h] [--version] [--skip_bids_validation] [--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL...
Something has to eat the options and their arguments first in order for `--omp-numthreads` to be removed but the numeral to remain, doesn't it? I thought `argparse` could catch illegal...
Yes, you're correct. My mistake. So, `--omp_num_threads=`?
After some further poking, it may be that simply changing the include line in `docs/eb_list_toolchains.rst` from ``` .. include:: version-specific/eb_list_toolchains.txt ``` to ``` .. include:: version-specific/toolchains.rst ``` and regenerating after...
This seems like it would be a desirable thing. I am only the system administrator, so my only comment would be that it would be great if the resulting binary...
PGI has been able to replicate and I have an open issue with them.
I think this is a problem in the `configure.ac` script. I made this change to `configure.ac` ``` $ diff configure.ac ../lwgeom.new/configure.ac 427c427 < AC_SUBST([PKG_LIBS], ["${PKG_LIBS} -lgeos_c"]), --- > AC_SUBST([PKG_LIBS], ["${PKG_LIBS}...