GseaVis

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1

So, I am so glad that Junjun has developed such a wonderful tool for the downstream RNA-seq analysis, which indeed help me a lot . However , in my perspective,...

5CNzhu

gseKEGG和gseaKEGG生成的结果无法显示基因名称

6

easondevin

A little suggestion about the "addPval"

2

Sometimes the P value and the adjusted P value are very low, and in that case when "addPval = T" is set, the P value and the Adjusted P value...

CC-DrDU

俊俊老师好！谢谢开发这个R包，请问怎么提取Core enrichment基因的running enrichment score。发现所有的教程都是教画图，但是没有教怎么提取感兴趣GO通路中基因的running enrichment score。谢谢老师！

2

shengxinxuexi

"Your gene is not in this pathway!Please choose again!"

5

``` mygene

tcmlab

Error in `check_aesthetics()`: ! Aesthetics must be either length 1 or the same as the data (1): xend, x and y

1

gseaNb的第256行 if (is.null(geneLabel))似乎应该改为if(dim(geneLabel)[1] == 0)，因为geneLabel取不到值的时候，是一个空的dataframe，而不是空值，会导致is.null()判断为False。

Gambrian

Errors: missing value where TRUE/FALSE needed

2

Hello, Thank you for developing this R package. But I have encountered an error when using your package. > gseaNb(object = gsea, geneSetID = "Parkinson disease",subPlot = 1) Error in...

fujianhan

Encountering some errors

4

Hello, I have encountered an error when using your package. First of all, when I used the result of gseGO(), the Description seemed to be "GO:0015669", but not in the...

ChristinaDing101

set title in the running score figure

1

Hi, Thank you for maintaining this tool, would it be possible to enable users to set the title of the figure? For example, sometimes users would like to use GO_ID...

wbvguo

对GSEA软件用不同数据集富集出来的通路，如何用一张图把几个不同数据集富集出来的通路画在一起呢？ 如hallmark和GO的画在一起，而不是只能单一数据集富集到的通路画在一起

jianguotao