Junghoon Shin

Here is my .stats file. ``` # gffcompare v0.11.7 | Command line was: #gffcompare-0.11.7.Linux_x86_64/gffcompare -r gencode.v19.annotation.gtf -o gffcompare_stringtie_merged stringtie_merged.gtf # #= Summary for dataset: stringtie_merged.gtf # Query mRNAs : 612833...

In the `.annotated.gtf` file, there is an attribute named `tss_id`. I noticed that transfrags with slightly different `start` positions share the same `tss_id`, but couldn't find any mention on this...

I've noticed some transcripts have negative coverage values in the output gtf file from StringTie 2.1.3b. Can this be a bug? Below is my script. ``` while read bam do...