Julio César

icon indicating a website link https://juliocesar.io icon indicating an email [email protected]

icon company Third Way Health icon location Bogotá, Colombia icon location Software Engineer, working on scaling protein language models for drug design.

Results 4 issues of Julio César

<input> values not shown

Is there any way to get an input tag value render as text on the generated PDF ?

Weird Inference Behavior with GPU: Sometimes it works or Segmentation Fault/Filesystem Space Error

Hello all, I am encountering inconsistent behavior during GPU inference. Sometimes the inference runs successfully, but other times it fails with either: - Segmentation fault or - Non-OK-status: has_executable.status() status:...

Bug Fix: Preserve full FASTA ID in alignment directory parsing to prevent truncation errors

## Background When running inference with `run_pretrained_openfold.py` and using precomputed alignments, the `parse_fasta` function is partially extracting the FASTA tag/ID from the original ID used to generate the alignments output...

OpenFold Local Jupyter Notebook 📔 | Metrics, Plots, Concurrent Inference

## Overview This PR introduces a fully featured Local Notebook for performing inference, obtaining metrics, ranking the best model, and generating plots in a structured and reproducible manner, particularly for...