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                                            Julien Richard Albert

CountReadsPerBin using bedFile does not return counts in the expected order

It would indeed be super nice to have the option to name the rows of `multiBamSummary BED-file --outRawCounts` From the docs, the last help line states: > --transcript_id_designator TRANSCRIPT_ID_DESIGNATOR >...

Implement support for different genetic codes

Hello, Has this been implemented? I am a new user and may have missed this option. Specifically I am trying to use a ciliate nuclear genetic code, where stop codons...