Jue Wang

Did you find a solution/workaround to this? I ran into the same thing. I wrote to Martin Steinegger and he said they probably aren't going to bother to look into...

@calclavia thanks for catching that! yes, looks like now I can get low MSEs, but the mean relative error is still somewhat large:  if i look at the individual...

I should mention that despite my initial experiments above showing some inaccuracies in FAVOR+ approximating attention directly, as part of a trained model it works reasonably well. And in particular,...

it's in this: https://github.com/RosettaCommons/RFDesign/blob/199f624c723bb5e48384aa97d1812899a64886f3/tutorials/halluc_SH3_binder/util/functions.py . there should be a cell in that jupyter notebook that will import it for you On Wed, Mar 29, 2023 at 2:09 PM Aravinda Munasinghe...

see my reply in https://github.com/RosettaCommons/RFDesign/issues/48

sorry for nto responding to this. the af2_interface_metrics.py requires a custom AF2 version, and really should not have been included in the public release of this repo. you can get...

see my reply in https://github.com/RosettaCommons/RFDesign/issues/48

could you email us ***@***.***, ***@***.***, ***@***.***) with the example inputs and outputs for this? there could be a bugfix that hasn't made it into the public version of this...

Send me your inputs and run script? I thought I fixed this on main after Jared's message but I can doublecheck on your case.

I think you will need to email this to me ([email protected]). Github did not forward your attachments to this thread.