juank1892

So I tried with the mzIdentML export, but the same issue :(  I can share the data of a QC sample, but how do you advise that I share...

Here is a link to google drive folder: https://drive.google.com/drive/folders/15O2b6l85fsmCGHNu4Oei4xp-r2MGzpgc?usp=sharing Not sure if this is useful to know, but the .mzXML is still in resolution mode display.

The raw MS data is imported into PEAKS. Then the software converts and exports it for further analysis (in my case Skyline). However, the lack of charge information might be...

I just uploaded the raw data and the mgf file exported from PEAKS Studio (this format has the charge state written) in the shared folder

Btw, the raw file had IMS separation of fragment ions so it doesn't work nicely in msconvert (at least what I have tried). If you manage to get a useful...

Kai! Thanks a lot! You are awesome for all the time invested into this! Indeed, it was a database search of 6 files. Sorry for not pointing out this and...