Javier Tamames
Javier Tamames
Hello Which version are you using? Any chance that you are mixing versions (like re-running an older project with a new version of Squeezemeta)?
Hello Please see issue #231 for the answer to the same question. Best, J
Hello Try updating to 1.6, several bugs were fixed for that script. Best, J
Hello Yes it is, no need to update the databases. Just use configure_nodb.pl.
What is there in the sqm_out/results directory?
Where is your aa file stored? Is it in /home/ps897/sharing/melanoma/contigs/fun_annot? If so, what happens if you try to run the script with: `sqm_annot.pl -f /home/ps897/sharing/melanoma/contigs/fun_annot -s sample.file -t 86 --nocog`
No, that won't work. Please update to 1.6 and restart in step 1, it will not redo the assemblies that you already have. Best, J
Hello It looks like your database is not properly installed. Did you run test_install.pl to check the installation? Best, J
That´s it. So please download again the databases and run configure_nodb.pl. Best, J
Yeah, probably your download failed. Please try again