Javier Tamames
Javier Tamames
Hello You mean that the script produced the 06.SAV500test.fun3.tax.wranks file, it is not empty and it contains valid taxonomic annotations? If so, that could point to a memory shortage when...
Hello It llooks like you ran your analysis with version 1.5 or beyond, but you are loading them into a SQMTools version 1.4 or below. Version 1.5 included a change...
Sure. I was working on that, formatted the eggnog5 database, but forgot to finish and upload it. I will go on working on that in the coming days. Best, J
In any case, remember that you can easily add and use any database you want. Please check the manual for instructions on how to do so. Best, J
Hello Did you change the syslog file somehow? Most information is missing from it. Also, the fact that a sam file was found in /home/plzrja/pig_phage_therapy/C1/data/sam/C1.C1.sam makes me think that this...
Hello Apparently the output message you posted corresponds to the second time you tried to run step 10 after it stopped somehow its normal execution. Please provide us with as...
Hello Any news on this? Best, J
You also have available the sqm_mapper.pl script, that maps reads to a reference a performs abundance estimation. Probably is better for your purposes. Best, J
Hello Syslog, please?
I see that the command you issued was: `/home/condapython/anaconda3/envs/SqueezeMeta/bin/SqueezeMeta.pl -m sequential -a [flye] -s sample_tomate.txt -f ./ -map [minimap2-ont] -t 8 --lowmem` Please remove the brackets from the assembler and...