jtackm
jtackm
Thanks! I'm currently running a setup similar to @urlicht and have not been having issues for a while.
True, this should definitely be added to the README (I'm actually surprised it isn't). I was pondering to allow user-provided index columns, but didn't get around to implement it yet...
Yes, metadata still has to be aligned between OTU table and meta data table. I added a statement to the README now.
FlashWeave requires many custom algorithms that need to be both really fast and maintainable. We started out in python, but quickly realized that cython/numba were too much overhead or too...
Yes, I agree it would be great to have FlashWeave also available as native R or Python packages. I'm a bit strained on time currently, but happy to support such...
Thanks, I wasn't aware of that. If MicroEco is feature-complete enough, I'd be happy to list that as an option on the main page.
It's not currently on my list, but depending how easy it is to do/maintain (and how many use it) I could look into it
Hi Nick! Good point, I will look into adding these to the docs. Currently one would have to look directly at the method definitions in `learning.jl` (e.g. `prec` defaults to...
Is this the full content of your .edgelist file? Because based on that, it looks like there are no edges in your network, which is not unexpected since your sample...
Thanks. So it seems you do get edges. How many lines does your .edgelist file have? Using relative abundances as input is fine, the same normalization can be applied.