Jonathan Striebel
Jonathan Striebel
Affected library: `webknossos` ## Use Cases & Context In https://github.com/scalableminds/webknossos/pull/6414 we introduce the (optional) largest segment id to the NML format. We should be able to read and save them...
### Description: - abc ### Issues: - fixes #... ### Todos: Make sure to delete unnecessary points or to check all before merging: - [ ] Updated Changelog - [...
## Detailed Description Affected library: cluster-tools It would be great to have a clear interface, what the cluster-tools executors setup and pass on between different jobs. This should then be...
## CLI integration tests Some of the CLI test scripts take quite long and should be sped up (by using a smaller test case, or by improving the routines if...
## Detailed Description - Affected library: webknossos To interoperate with other libraries with additional functionality, we might want to add direct support for those. Especially navis seems to provide large...
- [ ] `for_each_chunk` paired with executors is a powerful primitive for many analysis. Add an example that shows how it can be used - [ ] Export a dataset...
PR #683 added an empty test.sh, which should contain all tests from CI, and be used in CI instead.
After PR #683, initial typing is introduced to cluster_tools. However, we should enforce complete typing by uncommenting `# disallow_untyped_defs = true` in the pyproject.toml and adding the respective type-hints.
At the moment, the docs reflect the current master state. However, users usually want to see the version that is currently available via PyPI. Since they might not use the...
We should respect the layer's bounding box when handling wkw files explicitly in the (mag)view code, e.g. * `MagView.get_bounding_boxes_on_disk()` and `MagView.get_views_on_disk()` should get a `respect_layer_bounding_box=True` argument, which by default only...