Jérôme Salignon

Thanks for the quick reply! In my case it is not possible as I am building a pipeline that can be used installation-free. Hopefully, the meeting with Harold Pimentel will...

Hi. I confirm that the fetchngs is not useable as it is now for SRA ids. Neither version 1.6 or 1.4. In my case all my inputs are in SRA...

Hi. Yes it doesn't work. I double checked and in fact all my IDs are Geo Sample IDs (GSM).

Thanks for the suggestion. I managed to convert the IDs using the Entrez API as you suggested and run the command again with or without the --force_sratools_download option, but I...

Yes, here is the error: ``` Error executing process > 'NFCORE_FETCHNGS:SRA:SRA_IDS_TO_RUNINFO (SRR5000684)' Caused by: Process `NFCORE_FETCHNGS:SRA:SRA_IDS_TO_RUNINFO (SRR5000684)` terminated with an error exit status (1) Command executed: echo SRR5000684 > id.txt...

It works now. Thanks a lot!