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Hello Jacki, Thank you so much for your response and help I was able to successfully make patients and create them into a Cohort. When I was making Patients with...

Hi Jackie, thank you for your help I got the cohort to run and got the results but for for neoantigen_count, i've been getting "NaN" the code i'm running looks...

Hi Jackie, I got the HLA type information for the patient that I'm running and annotated with " hla_alleles='A2' " or " hla_alleles='B2' " for corresponding patients and I've been...

Hi Jackie, Below is the traceback from the error I got previously, Traceback (most recent call last): File "Neoantigen_cohorts.py", line 4, in from cohorts import Sample, Patient, Cohort, DataFrameLoader File...

Hi Tavi, I ran the commands and fixed the version to provenance_file_summary': {'cohorts': '0.5.5', 'isovar': '0.7.0', 'mhctools': '0.3.1', 'numpy': '1.13.0', 'pandas': '0.20.3', 'pyensembl': '1.0.3', 'scipy': '0.19.1', 'topiary': '0.1.2', 'varcode': '0.5.15'}}...