Jim Robinson

Hi @DiegoRBaquero I implemented the igv query seed solution, however it's not working with Amazon sigV4 signed URLs because the query differs from the url that was signed. Did you...

Hey all. If the motivation for this is IGV I think I could implement support in IGV in a fairly straightforward manner with a custom FeatureSource, the implementation would use...

Sure, although I'm leaving for vacation tomorrow so it might be a few weeks. Do we have an issue for this in IGV? I had not seen that star trek...

@yfarjoun I also need to support this in IGV, I have no idea what it will do with a complex SV but probably nothing useful. I see this is still...

Yes, the problem is the index. Does htsjdk support csi indexes? My understanding is it does not. I'm looking at the source code but don't see anything.

Hey @lbergelson @cmnbroad hang in there, must be crazy where you are. RE index modernization, ping me if you do that, I'm interested in modernizing the igv.js code as well,...

@andersleung @lbergelson I think there are other problems with the reference server, or rather were at the time this was filed. If its the case that the reference is redirecting...

Alternative solution would be to supply a method to determine if a reader is queryable, or has an index, without any side effects. Maybe ``` public boolean isIndexed() { return...

Hi @lbergelson thanks for the quick response. Stack trace is below. I do not get this error when loading a File, it behaves as expected, only when loading by URL....

And the test url for this is ```https://www.dropbox.com/s/kdqu0bbp1c1tfcl/egfr.gff3?dl=0```