Jelle R. Dalenberg

Hey devs! Thanks for this tool! I am testing it currently on FDG-PET images and it seems to do a good job. I am also wrapping it in a custom...

When `annotation['segmentation']` contains a single polygon list that is not provided as a list of lists but as a single list of coordinates, the logic in https://github.com/jsbroks/imantics/blob/master/imantics/annotation.py#L286 removes the entire...

When I try to export a dataset to COCO (`ds.export(style='coco')`) with 75k images (200-800kb), each containing a single segmentation, the export function uses around 128GB RAM and 60GB swap. I...

feat: Custom y-axis in TimeSeries

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This PR adds an `ylim` parameter to the TimeSeries tag and allows a custom change to the y-axis. I see it as a a work in progress to address #536....

Support for PET-BIDS

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Hey all, I built an in-house PET preprocessing pipeline and would like to update it to support BIDS (and make it available on github). However, I do not think there...

Improve robustness of brain extraction pipeline

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### What happened? While inspecting fmriprep 21.0.2 results I ran into this failed tissue segmentation, while it was succesful in 20.2.6. Any idea how I can fix this for the...

I tried out the new BIDS data selection option but noticed that it is trying to load all available functional data instead of a specific task. I would recommend adding...

`np.int` is deprecated since numpy 1.20.0 and results into an error in the `LVQBaseClass`: https://github.com/rickvanveen/sklvq/blob/4fba52a14ed37b0444becb96ef09c40d38d263ff/sklvq/models/_base.py#L691 `np.int` should be changed into `int`